Suzanne Paley

Suzanne Paley bio pic
Senior Computer Scientist, Artificial Intelligence Center

Suzanne Paley is a Senior Computer Scientist at SRI’s Artificial Intelligence Center. She works in the interdisciplinary field of bioinformatics to develop computer science methods for managing and analyzing biological data and knowledge. Suzanne has been instrumental in developing new techniques for representation and visualization of metabolic networks, regulatory relationships, experimental datasets and the other forms of biological data and knowledge that underlie the EcoCyc, MetaCyc and BioCyc collection of organism databases, and the Pathway Tools software suite.

Suzanne has an M.S. in Chemistry from Stanford University and an M.S. in Computer Science from UC Berkeley.

Key Projects

Recent publications

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  • Revisiting the y-ome of Escherichia coli

    EcoCyc.org, the most comprehensive curated genome database for the model microorganism E. coli K-12, has implemented a new categorization schema that indicates the degree to which a gene has been…

  • Visual Analysis of Multi-Omics Data

    Abstract We present a tool for multi-omics data analysis that enables simultaneous visualization of up to four types of omics data on organism-scale metabolic network diagrams. The tool’s interactive web-based…

  • The Comparative Genome Dashboard

    The Comparative Genome Dashboard is a web-based software tool for interactive exploration of the similarities and differences in gene functions between organisms.

  • CyanoCyc Cyanobacterial Web Portal

    CyanoCyc is a web portal that integrates an exceptionally rich database collection of information about cyanobacterial genomes with an extensive suite of bioinformatics tools.

  • The Omics Dashboard for Interactive Exploration of Metabolomics and Multi-Omics Data

    The Omics Dashboard is a software tool for interactive exploration and analysis of metabolomics, transcriptomics, proteomics, and multi-omics datasets.

  • The EcoCyc Database (2023)

    The long-term goal of the project is to describe the complete molecular catalog of the E. coli cell, as well as the functions of each of its molecular parts, to…


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