Artificial intelligence publications
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The E. coli EcoCyc Database: No Longer Just a Metabolic Pathway Database
No longer restricted to metabolic pathways, this curated database includes data on genomics, molecular biology, and more.
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Computational analysis of Plasmodium falciparum metabolism: Organizing genomic information to facilitate drug discovery
We have constructed PlasmoCyc, a PGDB for Plasmodium falciparum 3D7, using its annotated genomic sequence. We also add 956 additional annotations to proteins annotated as “hypothetical” using the GeneQuiz annotation system.
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Interactive Execution Monitoring of Agent Teams
We describe a monitoring framework for integrating many domain-specific and task-specific monitoring techniques and then using the concept of value of an alert to avoid operator overload.
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Introduction to a multiagent perspective
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The MetaCyc Metabolic Pathway Database
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Using Transformations to Improve Semantic Matching
In this paper, we describe how transformations can augment existing semantic approaches to further improve matching.
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Execution Monitoring in Agent Teams
We characterize the domain-independent challenges posed by this problem, and describe how properties of domains influence the challenges and their solutions.
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HpyCyc: Helicobacter pylori Pathway/Genome Database
A Pathway/Genome Database for Helicobacter pylori is available at URL BioCyc.org. The database integrates the full genome of H. pylori with its computationally predicted metabolic pathways.
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Mixed-initiative Planning in PASSAT
We present the novel application of a general-purpose knowledge-based system, SHAKEN, to the specific task of acquiring knowledge for military Course of Action (COA) analysis.
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A Mixed-initiative Framework for Robust Plan Sketching
We present a formal framework for robust plan sketching that defines key concepts and algorithms for interpreting and repairing plan sketches for two classes of problems.
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Knowledge acquisition, consistency checking and concurrency control for Gene Ontology (GO)
In this paper, we assess the applicability of a Knowledge Base Management System (KBMS), Protégé-2000, to the maintenance and development of GO.
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Adjustable Autonomy Challenges in Personal Assistant Agents: A Position Paper
The successful integration and acceptance of many multi-agent systems into daily lives crucially depends on the ability to develop effective policies for adjustable autonomy.