Artificial intelligence publications
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Exact Inference for Relational Graphical Models with Interpreted Functions: Lifted Probabilistic Inference Modulo Theories
In this paper, we expand PIMT to a lifted version that also processes random functions and relations.
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A Comparison of the Pathway Tools Software with the Reactome Software
This document compares SRI’s Pathway Tools (PTools) software with the Reactome software. Both software systems serve the pathway bioinformatics area, including representation and analysis of metabolic pathways and signaling pathways.
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The MetaCyc Database of Metabolic Pathways and Enzymes – A 2019 Update
This article provides an update on the developments in MetaCyc during September 2017 to August 2019, up to version 23.1.
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Bridging the Gap: Converting Human Advice into Imagined Examples
We present an approach that converts human advice into synthetic or imagined training experiences, serving to scaffold the low-level representations of simple, reactive learning systems such as reinforcement learners.
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The MultiOmics Explainer: Explaining Omics Results in the Context of a Pathway/Genome Database
We describe the MultiOmics Explainer, a new tool within the Pathway Tools software suite that leverages what is known about an organism’s metabolic and regulatory network to suggest explanations for…
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Privacy-Aware Adaptive Scheduling for Coalition Operations
We consider the use of an advanced cryptographic technique called secure multi-party computation to enable coalition members to achieve joint objectives while still meeting privacy requirements.
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Metabolic Route Computation in Organism Communities
We developed an efficient software tool to search for metabolic routes that include metabolic reactions from multiple organisms.
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Using pathway covering to explore connections among metabolites
Pathway Covering is a new algorithm that takes a list of metabolites (compounds) and determines a minimum-cost set of metabolic pathways in an organism that includes (covers) all the metabolites…
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Lucid Explanations Help: Using a Human-AI Image-Guessing Game to Evaluate Machine Explanation Helpfulness
We propose a Twenty-Questions style collaborative image retrieval game as a method of evaluating the efficacy of explanations (visual evidence or textual justification) in the context of Visual Question Answering.
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Interestingness Elements for Explainable Reinforcement Learning through Introspection
The framework uses introspective analysis of an agent’s history of interaction with its environment to extract several interestingness elements regarding its behavior.
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A Comparison of Microbial Genome Web Portals
This article compares the capabilities of the major microbial genome web portals to aid researchers in determining which portal(s) are best suited to their needs.
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Explanation to Avert Surprise
We present an explanation framework based on the notion of explanation drivers —i.e., the intent or purpose behind agent explanations. We focus on explanations meant to reconcile expectation violations and…