Information & computer science publications
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CyanoCyc Cyanobacterial Web Portal
CyanoCyc is a web portal that integrates an exceptionally rich database collection of information about cyanobacterial genomes with an extensive suite of bioinformatics tools.
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Human Body Model Based ID using Shape and Pose Parameters
We present a Human Body model-based IDentification system (HMID) system that is jointly trained for shape, pose, and biometric identification.
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The EcoCyc Database (2023)
The long-term goal of the project is to describe the complete molecular catalog of the E. coli cell, as well as the functions of each of its molecular parts, to…
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The EcoCyc Database in 2021
This article highlights recent improvements to the curated data in the areas of metabolism, transport, DNA repair, and regulation of gene expression.
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The BioCyc Metabolic Network Explorer
The Metabolic Network Explorer is a new addition to the BioCyc.org website and the Pathway Tools software suite that supports the interactive exploration of metabolic networks.
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Speech‐based markers for post traumatic stress disorder in US veterans
This study demonstrates that a speech-based algorithm can objectively differentiate PTSD cases from controls.
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Resources to discover and use short linear motifs in viral proteins
We survey viral uses of SLiMs to mimic host proteins, and information resources available for motif discovery.
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Using pathway covering to explore connections among metabolites
Pathway Covering is a new algorithm that takes a list of metabolites (compounds) and determines a minimum-cost set of metabolic pathways in an organism that includes (covers) all the metabolites…
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The Omics Dashboard for interactive exploration of gene-expression data
The Omics Dashboard is a software tool for interactive exploration and analysis of gene-expression datasets.
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The Future of the Internet of Things
The IoT can become ubiquitous worldwide—if the pursuit of systemic trustworthiness can overcome the potential risks.
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Building Code for the Internet of Things
In this document, we focus on the challenges associated with composing systems, rather than building individual programs or devices.
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FHE over the Integers: Decomposed and Batched in the Post-Quantum Regime
We propose a comprehensive study of applying third generation FHE techniques to the regime of FHE-OI. We present and analyze a third generation FHE-OI based on decisional AGCD without the…