Publications
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A Systematic Comparison of the MetaCyc and Kegg Pathway Databases
We present a comparison of the compound, reaction, and pathway content of MetaCyc version 16.0 and a KEGG version downloaded on Feb-27-2012...
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California Tinkering Afterschool Network Pilot Year Evaluation Report
SRI International conducted an evaluation of the pilot year of the California Afterschool Tinkering Network.
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Comorbidity of Alcoholism, HIVInfection and Hepatitis C: In Vivo Brain Imaging
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Towards a Theory of Application Compartmentalisation
Drawing a comparison with capability systems, we consider how a distributed system interpretation supports an argument that compartmentalisation improves application security.
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Understanding the Roles of Strictly Conserved Tryptophan Residues in O-2 Producing Chlorite Dismutases
The chlorite dismutases (Clds) degrade ClO2− to O2 and Cl− in perchlorate respiring bacteria, and they serve still poorly defined cellular roles in other diverse microbes.
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Ferritin and Ferrihydrite Nanoparticles as Iron Sources for Pseudomonas Aeruginosa
The ability of Pseudomonas aeruginosa to acquire iron from exogenous ferritin was assessed; ferritin is an iron-concentrating and antioxidant protein complex composed of a catalytic protein and caged ferrihydrite nanomineral…
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β-Carotene Biosynthesis in Probiotic Bacteria
To increase vitamin A coverage in malnourished children, we propose to engineer a probiotic bacterium that will produce β-carotene in the intestine, which will be metabolized to vitamin A.
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TB Mobile: A Mobile App for Anti-Tuberculosis Molecules with Known Targets
In order to learn from prior work we have collated information on molecules screened versus Mtb and their targets which has been made available in the Collaborative Drug Discovery (CDD) database.
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The Characteristics of the O-2 Herzberg Ii and Chamberlain Bands Observed with Virtis/Venus Express
Recent observations with the VIRTIS instrument on board Venus Express allowed us to re-examine the Herzberg II system of O2 and to further study its vertical distribution, in particular the…
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The Effectiveness of Online and Blended Learning: A Meta-Analysis of the Empirical Literature
Now that web-based learning has emerged as a major trend in both K–12 and higher education, the relative efficacy of online and face-to-face instruction needs to be revisited.
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Assessment of Cardiac Biomarkers in Cynomolgus Macaques
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Cross-Platform Provenance
Since 2006, a community of two dozen research groups interested in data annotation, derivation, and provenance have met regularly "to understand the capabilities of different provenance systems and the expressiveness…