Publications
-
Diagnosis cloud: Sharing knowledge across cellular networks
This paper presents a novel diagnosis cloud framework that enables the extraction and transfer of knowledge from one network to another. It also presents use cases and requirements. We present…
-
The Time Is Right to Focus on Model Organism Metabolomes
We propose a grand challenge for metabolomics studies of model organisms: to identify and map all metabolites onto metabolic pathways, to develop quantitative metabolic models for model organisms, and to…
-
Can we replace curation with information extraction software?
Can we use programs for automated or semi-automated information extraction from scientific texts as practical alternatives to professional curation? I show that error rates of current information extraction programs are…
-
Crowd-sourcing and author submission as alternatives to professional curation
This perspective considers the significant experience accumulated by the bioinformatics community with these two alternatives to professional curation in the last 20 years...
-
How the strengths of Lisp-family languages facilitate building complex and flexible bioinformatics applications
We present a rationale for expanding the presence of the Lisp family of programming languages in bioinformatics and computational biology research.
-
Representation and inference of cellular architecture for metabolic reconstruction and modeling
We developed a tool for inferring cellular architectures across many domains of life and extended our Cell Component Ontology to enable representation of the inferred architectures.
-
Mobility enhancement in polymer organic semiconductors arising from increased interconnectivity at the level of polymer segments
We present a model to estimate the mobility in polymers and to gauge the effect of increased interconnectivity at the level of polymer segments.
-
A Content-Centric Networking Forwarding Design for a Network Processor
We describe a method to use hardware-assisted hash tables for CCNx routing on variable length names.
-
System optimization of a heat-switch-based electrocaloric heat pump
We present detailed models and analysis that elucidate the key parameters for performance optimization.
-
Printed Hybrid Logic Circuits
Printing electronics circuits is possible not only with functional materials but also with inks containing microchips.
-
Hyperspectral imaging with a liquid crystal polarization interferometer
A novel hyperspectral imaging system has been developed that takes advantage of the tunable path delay between orthogonal polarization states of a liquid crystal variable retarder.
-
Printed dose-recording tag based on organic complementary circuits and ferroelectric nonvolatile memories
We have demonstrated a printed electronic tag that monitors time-integrated sensor signals and writes to nonvolatile memories for later readout.